- Guillén-Hernández S., Canto A., Villegas-Hernández H., González-Salas C., Poot-López G., Espínola-Novelo J.F., Pérez-España H. 2023. Spatial variation in helminth parasite communities of the French Grunt, Haemulon flavolineatum(Teleostei: Haemulidae), from the Yucatan peninsula. Journal of Parasitology 109(2):76-86. https://doi.org/10.1645/21-103. (marzo 2023).
- Russet-Rodríguez AJ, Pérez-España H. Payan-Alcacio JA, Peterson MS, De La Cruz-Agüero G, Enriquez-García AB, Ornelas-Vargas A, Cruz-Escalona V. 2023. Functional diversity in reef fish assemblages in the Parque Nacional Sistema Arrecifal Veracruzano, Mexico: Temporal and spatial changes. Frontiers in Marine Science. 10:1102373. doi: 10.3389/fmars.2023.1102373. (17 febrero 2023)
- Rivera-Higueras, M., Pérez-España, H. 2022. First record of the cryptic fishes Ptereleotris calliura (Gobiidae) and Liopropoma rubre (Serranidae) in the Veracruz Reef System, Mexico. Ciencias Marinas, 48(1). https://doi.org/10.7773/cm.y2022.3308 (1 diciembre 2022).
- Zepeda-Borja, K.M., Morteo, E., Guzón-Zatarain, O., Pérez-España, H., Delfín-Alfonso, C.A. Bello-Pineda, J. 2022. Interannual shifts in sea surface temperature and chlorophyll drive the relative abundance and group size of common bottlenose dolphins Tursiops truncatus on the Southeast Gulf of California. Latin American Journal of Aquatic Mammals 17(1) ISSN: 1676-7497. https://doi.org/10.5597/lajam00278 (28 abril 2022).
- Mayorga-Martínez M, Bello-Pineda J, Perales-Valdivia H, Pérez-España H, Heyman W D. 2021. Characterizing Geomorphology of Mesophotic Coral Reef Ecosystems in the Southwestern Gulf of Mexico: Implications for Conservation and Management. Frontiers in Marine Science 8:639359. ISSN: 2296-7745. doi: doi.org/10.3389/fmars.2021.639359 (junio 2021).
- González-Salas C, Pérez-España H, Guillén-Hernández S, Barrera-Guzmán A, Pech-Puch D, Días-Gamboa R, Villegas-Hernández H. 2021. Population discrimination of the French grunt, Haeumulon flavolinatum (Demarest, 1823) between the Campeche Bank and the Mexican Caribbean Sea, inferred by microsatellite loci. Regional Studies in Marine Science 44, 101749.
https://doi.org/10.1016/j.rsma.2021.101749 (Mayo 2021)
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Carreón-Palau L, Parrish CC, Del Ángel-Rodríguez JA, Pérez-España H. 2021. Seasonal shifts in fatty acids and sterols in sponges, corals, and bivalves, in a southern Gulf of Mexico coral reef under river influence. Coral Reefs. https://doi.org/10.1007/s00338-020-02042-1 (febrero 2021).
- Argüelles-Jiménez J., Rodríguez-Zaragoza FA., González-Gándara C., Alva-Basurto JC., Arias-González JE., Hernández-Landa R., Aguilar-Perera A., Okolodkov Y., Gutierrez-Velázquez AL., Zetina-Rejón MJ., Ulanowicz R., Pérez-España H. 2021.Functional developmental states of the Greater Caribbean coral reefs. Ecological Indicators 121: 107170. DOI: https://doi.org/10.1016/j.ecolind.2020.107170 (febrero 2021).
- Favoretto F., Mascareñas-Osorio I., León-Deniz L. González-Salas C., Pérez-España H., Rivera-Higueras M., Ruiz-Zárate MA., Vega-Zepeda A., Villegas-Hernández H., Aburto-Oropeza O. 2020. Being isolated and protected is better than just being isolated: a case study from the Alacranes Reef, Mexico. Frontiers in Marine Science. 7:583056. https://10.3389/fmars.2020.583056 (noviembre 2020).
- Olán-González M., Reyes-Bonilla H., Álvarez-Filip L., Pérez-España H., Olivier D. 2020. Fish diversity divergence between tripical eastern Pacific and tropical western Atlantic coral reefs. Environmental Biology of Fishes.103: 1323-1341. https://doi.org/10.1007/s10641-020-01026-y (septiembre 2020).
- Del Moral L.F., Meza-Abundio I, Pérez-España H. 2020. First confirmed record of occurrence of the Lesser devil ray, Mobula hypostoma (Elasmobranchii, Mobulidae), in the southwestern Gulf of Mexico. Latin American Journal of Aquatic Research. 48(4):696-699. DOI https://doi.org/10.3856/vol48-issue4-fulltext-2459 (septiembre 2020).
- Guzmán-Méndez I.A., Rivera-Madrid R., Planes S., Boissin E., Cróquer A., Agudo-Adriani E., González-Gándara C., Pérez-España H., Giro-Petersen A., Luque J., García-Rivas M.C., Aguilar-Espinosa M., Argüelles-Jiménez J., Arias-González J.E. 2020. Genetic connectivity of lionfish (Pterois volitans) in marine protected areas of the Gulf of Mexico and Caribbean Sea. Ecology and Evolution. 10:3844–3855. ISSN: 2045-7758. https://doi.org/10.1002/ece3.5829 (mayo 2020).
- Argüelles-Jiménez J, Alva-Basurto JC, Pérez-España H, Zetina-Rejón MJ, Arias-González JE. 2020. The measurement of ecosystem development in Caribbean coral reefs through topological indices. Ecological Indicators 110:1-11. ISSN: 1470-160X (doi: https://doi.org/10.1016/j.ecolind.2019.105866) (marzo 2020).
- Gil-Agudelo D L, Cintra-Buenrostro C E, Brenner J, González-Díaz P, Kiene W, Lustic C, Pérez-España H. 2020. Coral Reefs in the Gulf of Mexico Large Marine Ecosystem: Conservation Status, Challenges, and opportunities. Frontiers in Marine Science 6:807 (doi: 10.3389/fmars.2019.00807) (enero 2020).
- Robertson, D.R., Pérez-España, H., Domínguez-Domínguez, O., Estapé, C.J., Estapé, A.M. 2019. An update to the inventory of shore-fishes from the Parque Nacional Sistema Arrecifal Veracruzano, Veracruz, México. ZooKeys 882:127-157. ISSN 1313–2970 (online), ISSN 1313–2989 (print) (doi: 10.3897/zookeys.882.38449) (octubre 2019).
- Norzagaray-López, C.O., Calderón-Aguilera, L.E., Álvarez-Filip, L., Barranco-Servin, L. M., Cabral-Tena, R. A., Carricart-Ganivet, J.P., Cupul-Magaña, A., Horta-Puga, G., López-Pérez, A., Pérez-España, H., Reyes-Bonilla, H., Rodríguez- Troncoso, A.P., Tortolero-Langarica, J.J.A. 2018. Base de datos de almacenes de carbonato de calcio en arrecifes coralinos de México. Elementos para Políticas Públicas 2(3): 147-163. ISSN: 2448-5578 (http://www.elementospolipub.org/ojs/index.php/epp/article/view/45 ).
- Colín-García, N.A., Campos, J.E., Tello-Mussi, J.L., Pérez-España, H., Chiappa-Carrara, X. 2018. First record of the invasive coral Oculina patagonica de Angelis, 1908 (Cnidaria, Scleractinia) in the Gulf of Mexico. Check List 14(4):613-617. ISSN 1809-127X (electrónico) (https://doi.org/10.15560/14.4.613)
- Carreón-Palau L, Parrish CC, Pérez-España H, Aguiñiga-García S. 2018. Elemental ratios and lipid classes in a coral reef food web under river influence. Progress in Oceanography 164:1-11. (ISSN electrónico 0079-6611) https://doi.org/10.1016/j.pocean.2018.03.009
- Salas-Monreal D, Marin-Hernández M, Salas-Pérez JJ, Salas-de-León, DA, Monreal-Gómez MA, Pérez-España H. 2018. Coral reef connectivity within the Western Gulf of Mexico. Journal of Marine Systems 179:88-99. (ISSN electrónico 0924-7963) https://doi.org/10.1016/j.jmarsys.2017.12.001
- Nuñez-Lara, E., González-Salas, C., Pérez-España, H. 2017. The Reef Fish Community of Obispos Reef, Campeche Bank Reefs, Gulf of Mexico: exploring poorly-know sites. Reef Encounter. 32 (1): 63-65. ISSN 0225-27987
- Carreón-Palau, L., Parrish C.C., Pérez-España, H. 2017. Urban sewage lipids in the suspended particulate matter of a coral reef under river influence in the South West Gulf of Mexico. Water Research 123: 192-205. ISSN: 0043-1354. https://dx.doi.org/10.1016/j.watres.2017.06.061
- Robertson D.R., H. Perez-España, E. Nuñez Lara, F. Puc Itza, N. Simoes. 2016. The fishes of Cayo Arcas (Campeche Bank, Gulf of Mexico): an updated checklist. Zookeys. 640: 139-155. (ISSN: 1313-2970 (online) ISSN 1313-2989 (impresa)). https://doi.org/10.3897/zookeys.640.10862
- Nuñez-Lara E., J E Arias-González, H. Pérez-España, P. Legendre. 2016. Multi-scale spatial and partitioning analysis of the reef-fish community composition of the Yucatan fringing reef system. Ecological Complexity 28: 69-76 (ISSN 1476-945X). DOI:10.1016/j.ecocom.2016.08.002
- Arellano-Méndez L.U., J. Bello Pineda, J.A. Aké-Castillo, H. Pérez-España, L. Martínez-Cárdenas. 2016. Distribución espacial y estructura morfométrica de las praderas de Thalassia testudinum (Hydrocharitaceae) en dos arrecifes del Parque Nacional Sistema Arrecifal Veracruzano, México. Revista de Biología Tropical. 64(2): 427-448 (ISSN 0034-7744).
- Robertson D.R., N. Simoes, C. Gutiérrez-Rodríguez, V.J. Piñeros, H. Pérez-España. 2016. An Indo-Pacific damselfish well established in the southern Gulf of Mexico: prospects for a wider, adverse invasion. Journal of the Ocean Science Foundation 19: 1-17 (ISSN 1937-7835).
- Melo-Merino, S.M., H. Pérez-España, M.A. Román-Vives. 2015. Reclutamiento coralino in situ y en sustrato artificial en el Sistema Arrecifal Veracruzano, suroeste del golfo de México. E-bios 2(8): 96-105. (ISSN 2007-5782).
- Reyna-González, P.C., J. Bello-Pineda, L.D. Ortíz-Lozano, H. Pérez-España, P. Arceo, J. Brener. 2014. Incorporating expert knowledge for development spatial modeling in assessing ecosystem services provided by coral reefs: A tool for decision-making. Revista de Biología Marina y Oceanografía 49(2): 279-292. (ISSN versión electrónica: ISSN 0718-1957, ISSN versión impresa: 0717-3326)
- Villegas Sánchez, C.A., H. Pérez España, R. Rivera Madrid, D. Salas Monreal, J.E. Arias González. 2014. Subtle genetic connectivity between Mexican Caribbean and southwestern gulf of Mexico reefs: the case of the bicolor damselfish, Stegastes partitus. Coral Reefs 33: 241-251. DOI 10.1007/s00338-013-1083-4 (ISSN: 0722-4028).
- Ortiz-Lozano, L., H.Pérez-España, Granados-Barba, A., González-Gándara, C., Gutiérrez-Velázquez, A., Martos, J. 2013. The Reef Corridor of the Southwest Gulf of Mexico: Challenges for its management and conservation. Ocean & Coastal Management 86: 22 – 32 (ISSN: 0964-5691)
- Del Moral Flores, L.F., J. L. Tello-Mussi, H. Reyes-Bonilla, H. Pérez-España, J.A. Martínez-Pérez, G. Horta-Puga, L. A. Velasco-Mendoza, P. A. Alvarez Del Castillo Cárdenas. 2013. Sistemática y afinidades zoogeográficas de la ictiofauna del sistema arrecifal veracruzano, México. Revista Mexicana de Biodiversidad 84: 825-846 (ISSN:1870-3453)
- Avendaño-Alvarez, J.O., H. Pérez-España, D. Salas-Monreal, E. García-Rodríguez. 2013. Captures and diet of three sharks species in the Veracruz Reef System. Open Journal of Marine Science, 3: 66-73 (ISSN print:2161-7384, ISSN Online: 2161-7392).
- Carreón-Palau, L., Parrish, C.C., Del-Ángel-Rodríguez, J., Pérez-España, H., Aguiñiga-García, S. 2013. Revealing organic carbon sources fueling a coral reef food web in the gulf of mexico using stable isotopes and fatty acids. Limnology and oceanography. 58(2): 593-612 (ISSN 0024-3590).Avendaño-Alvarez, J.O., H. Pérez-España, D. Salas-Monreal, E. García-Rodríguez. 2013. Captures and diet of three sharks species in the Veracruz Reef System. Open Journal of Marine Science, 3: 66-73 (ISSN print:2161-7384, ISSN Online: 2161-7392).
- Reyna-González, P., J. Bello-Pineda, L. Ortiz-Lozano, H. Pérez-España. 2011. Modelo para la evaluación de los servicios ambientales en arrecifes coralinos. Ciencia, Tecnología e Innovación para el Desarrollo de México. 4 (92): 1
- Ake-Castillo, J. A., Y.B. Okolodkov, K.A. Steidinger, J.A.G. González-González, H. Pérez-España. 2010. Karenia sp. “Mexican hat” first bloom in Mexico. Harmful Algae News. 41:16-17
- Pérez España, H., Abarca Arenas, L. G. y Jiménez Badillo, M. L. 2006. Is fishing-down trophic web a generalized phenomenon? The case of Mexican Fisheries. Fisheries Research. 79:349-352. (ISSN: 0165-7836)
- Pérez-España, H., Saucedo-Lozano, M. y Raymundo-Huizar, A. R. 2005. Trophic ecology of demersal fishes from the pacific shelf off central Mexico. Bulletin of Marine Science. 77(1):19-32. (ISSN: 0007-4977).
- Raymundo-Huizar, A. R., Perez-España, H., Mascaró, M. y Chiappa-Carrara X. 2005. Feeding habits of the dwarf weakfish (Cynoscion nannus) off the coasts of Jalisco and Colima, Mexico. Fishery Bulletin. 103(2): 453-460. (ISSN 0090-0656)
- Arreguín-Sánchez, F. Agustín Hernández-Herrera, M. Ramírez-Rodríguez and H. Pérez-España. 2004. Optimal management scenarios for the artisanal fisheries in the ecosystem of La Paz Bay, Baja California Sur, Mexico. Ecological Modelling. 172(2-4): 373-382. ISSN: 0304-3800
- Pérez España, H. 2003. Ecological importance of snappers in the stability of modeled coastal ecosystems. Ecological Modelling, 168(1-2): 13-24. ISSN: 0304-3800
- Pérez España, H. y F. Arreguín-Sánchez. 2001. An inverse relationship between stability and maturity in models of aquatic ecosystems. Ecological Modelling. 145 (2-3): 189-196. ISSN: 0304-3800
- Martinez-Diaz S.F., Martinez-Pecero R., Rosales-Velazquez M.O., Alvarado-Castillo R., Perez-España H. y Tucker Jr. J.W. 2001. Voluntary spawning, early development and completion of the life cycle of spotted sand bass in the laboratory. Journal of the World Aquaculture Society. 32 (1):122-129.
- Grim, J. N., Pérez España H. y Martínez Díaz, S. 2000. The morphology of Protoopalina pomacantha, n. sp., symbiont in the rectum of the Angelfishes, Pomacanthus zonipectus and Holocanthus passer; A light, scanning and transmission electron Microscopic study. European Journal of Protistology. 36(3):343-350.
- Martínez Díaz, S. y H. Pérez España. 1999. Feasible mechanisms for algal digestion in the king angelfish (Pisces: Pomacanthidae). Journal of Fish Biology. 55(4):692-703. ISSN: 1095-8649
- Pérez España, H. y F. Arreguín Sánchez. 1999. Complexity related to behavior of stability in modeled ecosystems. Aquatic Ecosystem Health and Restoration. 2(2):129-135. ISSN: 1463-4988
- Pérez España, H. y F. Arreguín Sánchez. 1999. A measure of ecosystem maturity. Ecological Modelling. 119(1): 79-85. ISSN: 0304-3800
- Pérez España, H., F. Galván Magaña y L.A. Abitia Cárdenas. 1998. Growth, consumption, and productivity of the California Killifish Fundulus parvipinnis (Pisces: Cyprinodontidae) in Ojo de Liebre Lagoon, Mexico. Journal of Fish Biology, 52(5): 1068-1077, may. ISSN: 1095-8649
- Galván Magaña, F., L.A. Abitia Cárdenas, J. Rodríguez Romero, H. Pérez España y H. Chavez Ramos. 1996. Systematic list of the fishes from Cerralvo Island, Baja California Sur, Mexico. Ciencias Marinas, 22(3): 295-311, septiembre. ISSN 0185-3880
- Pérez España, H., F. Galván Magaña y L.A. Abitia Cárdenas. 1996. Temporal and spatial variations in the structure of the rocky reef fish community of the Southwest Gulf of California, Mexico. Ciencias Marinas, 22(3): 273-294, septiembre. ISSN 0185-3880
- Pérez España, H. y L.A. Abitia Cárdenas. 1996. Description of the digestive tract and feeding habits of the king angelfish and the Cortes angelfish. Journal of Fish Biology, 48(5): 807-817, mayo. ISSN: 1095-8649