[galeria-proyecto-aula]
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| Journal of Food, Agriculture & Environment |
Ramos-Fernández A., López-Ramírez F., Flores-Estevez N., Jiménez-Montaño M.A., Sánchez-Velásquez L.R., Pineda-López M.R. and Noa-Carrazana, J.C. (2013). An approach to finding enzymatic restriction patterns for molecular characterization of Amanita muscaria. Journal of Food, Agriculture & Environment, Vol.11 (1): 1099-1102. Print ISSN: 1459-0255; Online ISSN: 1459-0263. January.
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| Symmetry: Culture and Science |
Jiménez-Montaño M.A. (2012). A Markov Information Source For The Syntactic Characterization Of Amino Acid Substitutions In Protein Evolution. Symmetry: Culture and Science, Vol. 23, Nos. 3-4, 323-342. Print ISSN: 0865-4824; Online ISSN: 2226-1877.
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| Jiménez-Montaño M.A., and Matthew He (2011). Alignment-free phylogenetic outline of a random-sequence library of non-biological proteins. Supplementary material |
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Jiménez-Montaño M.A. , Feistel, R., and Diez-Martínez O. (2010). Information Hidden in Signals and Macromolecules I: Symbolic Time-Series Analysis. In: Nonlinear Dynamical Systems Analysis for the Behavioral Sciences Using Real Data. Stephen J. Guastello, and Robert A.M. Gregson (Eds.). CRC Press United Kingdom. ISBN: 978-1-4398199-7-5.
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| BioSystems |
Jiménez-Montaño M.A. (2009). The fourfold way of the genetic code. BioSystems, Vol. 98 (2), 105-114. ISSN: 0303-2647. November.
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| Springer-Verlag |
Jiménez-Montaño M.A., and Matthew He (2009). Irreplaceable Amino Acids and Reduced Alphabets in Short-term and Directed Protein Evolution. In Bioinformatics Research and Applications. Mandoiu, Ion; Narasimhan, Giri; Zhang, Yanquing (Eds.). Springer-Verlag Berlin Heidelberg. ISBN: 978-3-642-0 1550-2. pp. 297–309.
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| Supplementary material – Irreplaceable Amino Acids and Reduced Alphabets in Short-term and Directed Protein Evolution | |||
| Supplementary material – Codon substitution probability distributions of replaceable and irreplaceable amino acids in short-term evolution | |||
| Revista Mexicana de Física | Coronel-Brizio H. F, Hernández-Montoya A. R., Jiménez-Montaño M.A.,. Mora-Forsbach L. E. (2007). Una prueba empírica de generadores de números pseudoaleatorios mediante un proceso de decaimiento exponencial. Revista Mexicana de Física, Vol. 53 (5): 350-357. | |
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| Jiménez-Montaño M. A (2006). Las dos caras de Jano de la biología molecular: los aspectos físico-químicos e informacionales del lenguaje genético, en: La Física Biológica en México: Temas Selectos .L. García-Colín S.,P.Miramontes, A. Rojo, L. Dagdug (Eds.). El Colegio Nacional. México, D. F. Octubre 2006. 421-436. | |
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| Periodicum Biologorum |
Jiménez-Montaño M. A., Lucio-García H. R., Ramos-Fernández A. (2005). Computer Simulation to Generate Simplified Proteins With Stochastic Grammars. Periodicum Biologorum. Vol. 107 (4): 397-402.
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| World Scientific Pu. Co. Singapur | Jiménez-Montaño M. A. (2005). Applications of Hyper Genetic Code to Bioinformatics. In Advances in Bioinformatics and Its Applications. Matthew He, Giri Narasimhan, Sergei Petoukhov (Eds.). World Scientific Pu. Co. Singapur. 473-481 | |
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| Cruz Ramirez N., Ponce Ruiz. M.A., Jiménez Montaño M. A. , Acosta Mesa H. G. (2005). Is the signal-to-noise distance enough to determine the gene-markers’ class label? a preliminary study using Bayesian networks, en Avances en la Ciencia de la Computación 2005. L. Villaseñor, A. Martínez (Eds.) pp. 155-158. SMCC, México. | |
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| Sandria-Reynoso J. C. Jiménez Montaño M. A.(2005). Análisis de secuencias de ADN con Wingramm 2, en Avances en la Ciencia de la Computación. L. Villaseñor, A Martínez (Eds.) pp. 159-162. SMCC, México. | |
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| Jiménez-Montaño M.A., Ramos Fernández A., Lucio García H.R. (2005).Consenso de alfabetos reducidos de aminoácidos y su aplicación al diseño de secuencias de proteínas simplificadas, en Avances en la Ciencia de la Computación 2005. L. Villaseñor, a. Martínez (Eds.) pp. 163-166. SMCC, México. | |
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| Guerra Hernández A., Jiménez-Montaño M.A , de la Mora Basáñez C. R. (2005). The significance of nucleotides within DNA codons: a quantitative approach, en Avances en la Ciencia de la Computación. L.Villaseñor, A. Martínez (Eds.) pp. 167-169. SMCC, México. | |
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| Bárcenas-Pazos C, Cázares-Martínez J., Galicia-Castellanos S., Sandria Reynoso J. C.,Ronzón-Pérez P., Jiménez-Montaño M.A. (2005). Identificación de secuencias funcionales del dominio 3’-5’ exonucleasa de polimerasas de adn (pol c) mediante alineamiento y aplicación de alfabetos reducidos, en Avances en la Ciencia de la Computación. L. Villaseñor, A. Martínez (Eds.) pp. 170-173. SMCC, México. | |
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| World Scientific Pu. Co. Singapur | Jiménez-Montaño M. A. (2004). Applications of Hyper Genetic Code to Bioinformatics. Journal of Biological Systems. Vol. 12: 5-20. | ||
| Nonlinear Dynamics, Psychology & Life sciences | Jiménez-Montaño M. A. , Feistel R., Diez-Martínez O. (2004). Information Hidden in Signals and Macromolecules I. Symbolic Time-series Analysis. Nonlinear Dynamics, Psychology & Life sciences. Vol. 8 (4): 445-478. | ||
| Springer-Verlag | Ebeling W., Jiménez-Montaño M. A., Pohl T. (2003) Entropy and Complexity of Sequences. In Entropy Measures, Maximum Entropy Principles and Emerging Applications. Karmeshu (Ed.). Studies in Fuzziness and Soft Computing. Vol. 119: 209-227. Springer-Verlag, Berlin. | ||
| BioSystems | Jiménez-Montaño M.A., Ebeling W., Pohl T., Rapp P.E. (2002) Entropy and complexity of finite sequences as fluctuating quantities. BioSystems, Vol. 64: 23-32. | ||
| APS Journals | Rapp P. E., Cellucci C.J., Korslund K.E., Watanabe T.A.A., Jiménez-Montaño M.A. (2001) Effective normalization of complexity measurements for epoch length and sampling frequency. Physical Review E, Vol. 64: 016209. | |
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| Springer-Verlag |  |
Ebeling W., Jiménez-Montaño M. A., Pohl T. (2001) Entropy and Complexity of Sequences. In Entropy Measures, Maximum Entropy Principles and Emerging Applications. Karmeshu (Ed.) Springer-Verlag, Berlin. | |
| The European Physical Journal B | Steuer R. , Molgedey L., Ebeling W., Jiménez-Montaño M.A (2001) Entropy and optimal partition for data analysis. The European Physical Journal B. Vol 19: 265-269. | ||
| BioSystems | Jiménez-Montaño M.A., Penagos H., Hernández-Torres A., O. Díez-Martínez (2000) Measures of complexity in neural spike-trains of the slowly adapting stretch receptor organs. BioSystems. Vol. 58: 117-124. | ||
| Journal of Theoretical Biology | Weiss O., Jiménez-Montaño M.A, Herzel H. (2000) Information content of protein sequences. J. Theor. Biol., Vol 206: 379-386 . | ||
| BioSystems | Jiménez-Montaño M.A (1999) Protein Evolution Drives the Evolution of the Genetic Code and Vice Versa. BioSystems Vol. 54: 47-64. | ||
| Springer-Verlag | |
Ebeling W., Scharnhorst A., Jiménez-Montaño M. A., Karmeshu (1999) Evolutions-und Innovationsdynamik als Suchprozess in Komplexen Adaptiven Landschaften. Komplexe Systeme und Nichtlineare Dynamik in Natur und Gesellschaft, K. Mainzer (Ed.) Springer-Verlag. Berlin. 447-473. | |
| Physics World | Ebeling W., Jiménez-Montaño M. A. (1999) Complexity simplified for beginners. Review of the book: “Foundations of Complex Systems” by Sunny Auyang, Cambridge University Press, 1997. Physics World, 12 (1): 38-39. | |
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Jiménez-Montaño M.A., Pöschel T., Rapp P.E. (1997) A Measure of the Information Content of Neural spike Trains. In Biological Complexity, A Symposium. E. Mizraji, L. Acerenza, F. Alvarez and A. Pomi (Editors). D.I.R.A.C. Facultad De Ciencias, Montevideo, Uruguay, 133-142. | ||
| Gordon and Breach Science Publishers | Ebeling W., Jiménez-Montaño M. A., Karmeshu (1997) Dynamics of Innovations in Technology and Science Based on Individual Development. In Self-Organization of Complex Structures: From Individual to Collective Dynamics, Frank Schweitzer (Editor). Gordon and Breach Science Publishers. U.K., 407-414. | |
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Jiménez-Montaño M. A., Zamora-Cortina L. (1997) On the information Content and Algorithmic Complexity of Random Sequences and Biosequences. In Printed Memories of the Primer Encuentro de Computación ENC 97. Memorias, Aprendizaje. SMIA, SMCC. Querétaro, Qro. México., 83-89. | ||
| Journal of Evolutionary Economics | Bruckner E., Ebeling W., Jiménez-Montaño M.A., Scharnhorst A. (1996) Nonlinear Stochastic Effects of Sustitution: An Evolutionary Approach. J. of Evolutionary Economics, Vol. 6: 1-30. | ||
| BioSystems | |
Jiménez-Montaño M.A., de la Mora-Basáñez R., Pöschel T. (1996). The Hypercube Structure of the Genetic Code Explains Conservative and Non-Conservartive Aminoacid Substitutions in Vivo and in Vitro . BioSystems Vol. 39: 117-125. | |
| International Journal of Bifurcation and Chaos | Storella R.J., Shi Y., Wood H.W., Jiménez-Montaño M.A., Albano A. M. and Rapp P.E. (1996). The Variance and the Algorithmic Complexity oh Heart Rate Variability Display Different Responses to Anesthesia. Int. J. of Bifurcation and Chaos Vol. 6 (No. 11.) : 2169-2172. | |
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| Springer-Verlag | Herzel H., Ebeling W., Schmitt A.O., Jiménez-Montaño M.A. (1995). Entropies and Lexicographic Analysis of Biosequences, in From Simplicity to Complexity in Chemistry, Miller A., Dress A. and Vögtle (Eds.) Springer-Verlag, Heidelberg. | ||
| World Scientific Publishing Co. | Jiménez-Montaño M.A., de la Mora-Basáñez R, Pöschel T. (1995). On the Hypercube Structure of the Genetic Code, in Bioinformatics and Genome Research, H. Lim and C. R. Cantor (Eds.) World Scientific Publishing Co. Ltd. Singapore. 445-455. | ||
| Journal of Neuroscience | Rapp P. E., Zimmerman I. D., Vining E. P., Cohen N., Albano. A. M. and Jiménez-Montaño M. A. (1994). The Algorithmic Complexity of Neural Spike Trains Increases During Focal Seizures. J. of Neuroscience. Vol. 14: 4731-4739. | |
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| Physics Letters A | Rapp P. E., Albano A. M., Zimmerman I. D. Jiménez-Montaño M. A. (1994), Phase-randomized surrogates can produce spurious identifications of non-random structure. Physics Letters A. Vol. 192: 27-33. | ||
| BioSystems | Jiménez Montaño M. A. (1994), On the Syntactic Structure and Redundancy Distribution of the Genetic Code. BioSystems Vol 32, pp 11 – 23. | ||
| BioSystems | Lara-Ochoa F., Vargas-Madrazo E., Jiménez-Montaño M. A. and Almagro J. C. (1994), Patterns in the Complementary Determining Regions of Immunoglobulins (CDRs). BioSystems Vol. 32, pp 1 – 9. | ||
| Journal of Molecular Evolution | Vargas-Madrazo E., Lara-Ochoa F. and Jiménez-Montaño M. A. (1994), A Skewed Distribution of Amino Acids at Recognition Sites of the Hypervariable Region of Immunoglobulins. J. Molecular Evolution Vol 38: 100-104. | |
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| Bruckner E., Ebeling W., Jiménez- Montaño M. A. and Scharnhorst A. (1994), Hyperselection and Innovation Described by a Stochastic Model of Technological Evolution in Evolutionary Economics and Chaos Theory, L. Leydesdorff & P. van den besselaar (Eds.) Pinter Publishers. London. pp 79-90. | |
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| International Journal of Bifurcation and Chaos | Rapp P. E. , Goldberg G.,Albano A. M., Janicki M. B., Murphy D., Niemeyer E. and Jiménez-Montaño M. A. (1993), Using Coarse-Grained Measures to Characterize Electromyographic Signals. International J. of Bifurcation and Chaos, Vol. 3: 525-541. | ||
| Addison-Wesley | Cocho G., Lara-Ochoa F., Vargas E., Jiménez-Montaño M. A. and Rius J. L. (1993) Structural Patterns in Macromolecules in Thinking About Biology, Stein W. and Varela F. J. eds. Santa Fe Institute Studies in the Sciences of Complexity. Addison-Wesley Pu. Co. Reading, Mass. pp 105-119. | |
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| Wissenschaftszentrum Berlin fur Sozialforschung | Bruckner E., Ebeling W., Jiménez-Montaño M. A. and Scharnhorst A. (1993) Technological Innovations: A Self-Organization Approach (monography) WZB, Wissenschaftszentrum Berlin fur Sozialforschung. Berlin, Germany. | |
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| Jiménez-Montaño M. A. , Martínez-Morales M. y Ojeda M. M.(1993) Un Modelo Estocástico de Competencia Tecnológica . Revista Investigación Operacional, Universidad de la Habana, Cuba . Vol. 14: 3-10. | |||
| Springer-Verlag | Ebeling W., Jiménez-Montaño M. A., Bruckner E., and Scharnhorst A. (1992) A Stochastic Model of Technological Evolution in Economic Evolution and Demographic Change, Haag G., Mueller U. and Troitzch K. G. eds Springer-Verlag, Berlin, pp. 75 – 95. | |
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| La Ciencia y el Hombre | |
Jiménez-Montaño M. A., Vargas-Madrazo E., Ojeda M. M., Vargas G. y Suardíaz P. (1992). Análisis Estadístico de la Variabilidad de los Aminoácidos en los Dominios Variables de las Inmunoglobulinas. La Ciencia y el Hombre. Vol. 10: 50-66. | |
| Grupo Noriega Editores | |
Chavoya Aceves O., García de la Barrera F. y Jiménez Montaño M.A. (1992) Programa para estimar la complejidad gramatical de una secuencia. Memorias IX Reunión Nacional de Inteligencia Artificial, SMIA. Editorial LIMUSA, Grupo Noriega Editores . México, España. pp. 243 – 254. | |
| Mathematical Biosciences | Rapp P. E., Jiménez-Montaño M. A., Langs R: J., Thomson L. and Mees A. I..(1991). Toward a Quantitative Characterization of Patient-Therapist Communication. Mathematical Biosciences Vol. 105: 207-227. | ||
| BioSystems | Jiménez-Montaño M.A. and Lara-Ochoa F. (1991) On the Skew Distribution of Immunoglobulins and the Inverted Protein-Folding Problem. BioSystems, Vol. 24: 261-267. | |
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| Edinburgh University Press | Jiménez-Montaño M. A.. (1989) . Formal Languages and Theoretical Molecular Biology in Theoretical Biology (Epigenetic and Evolutionary Order from Complex Systems), Goodwin B. and Saunders P. eds. Edinburgh University Press, Edinburgh, U. K. pp. 199-210. | ||
| Teubner Verlag | Jiménez-Montaño M. A. (1989). Pattern Recognition, Molecular Sequence Analysis and Biological Information in Irreversible Processes and Selforganization, Ebeling W. and Ulbricht H. eds. Teubner-Texte zur Physik, B. G. Teubner Verlag, Leipzig, pp. 136-151. | ||
| La Ciencia y el Hombre | |
Jiménez-Montaño M. A. (1989).Reconocimiento de Patrones, Análisis de Secuencias e Información Biológica. La Ciencia y el Hombre. Universidad Veracruzana, Xalapa, Vol.4: 61-79. | |
| La Ciencia y el Hombre | |
Jiménez-Montaño M. A. (1988).Sobre la Lingüística Estructural y el Lengüaje Genético. La Ciencia y el Hombre. Universidad Veracruzana, Xalapa, Vol.2:61-70. | |
| Sociedad Matemática Mexicana | |
Jiménez-Montaño M. A, Zamora Cortina L., Trejo López J. (1988). Un Criterio de Optimización en el Reconocimiento Sintáctico de Patrones. Rev. Aportaciones Matemáticas, Comunicaciones,Vol.5:31-52.Sociedad Matemática Mexicana. Mex. D.F. | |
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Jiménez-Montaño M. A. (1987).On the Syntax Analysis of Globins. Reporte de trabajo, Centro de Inv. Biológicas U.V. Xalapa, Ver. México. | ||
| Bulletin of Mathematical Biology | Jiménez-Montaño M. A. (1984).On the Syntactic Structure of Protein Sequences, and Concept of Grammar Complexity. Bulletin of Mathematical Biology, (Mathematical Problems in the Analisis of Molecular Sequences),Vol.46(4):641-660. | ||
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Jiménez-Montaño M. A.,Ebeling W.(1980).A Stochastic Evolutionary Model of Technological Change. Collective Phenomena: Vol.3:107-114. | ||
| Mathematical Biosciences | Ebeling W.,Jiménez-Montaño M. A. (1980).On Grammars, Complexity, and Information Measures of Biological Macromolecules. Mathematical Biosciences Vol. 52:53-71. | |
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| Ebeling W., Feistel R.,Jiménez-Montaño M. A. (1977). On the Theory of Stochastic Replication and Evolution of Molecular Sequences. Rostoker Physik Manuskripte: Vol. 2: 105- 127. | |